Main
Hyun-Hwan Jeong
Computational Biologist/Computer Scientist
Software
CB2 (https://CRAN.R-project.org/package=CB2)
CB2 is a R package which helps CRISPR pooled screen data analysis from the quantification to the hit gene selection.
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CRISPRCloud2 (https://crispr.nrihub.org/)
CRISPRCloud2 is a user-friendly, cloud-based, and one-stop analysis platform for the deconvolution of CRISPR pooled screen high-throughput sequencing data.
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SalmonTE (https://github.com/hyunhwan-jeong/SalmonTE)
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element abundances from Next Generation Sequencing Data.
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MINA (https://github.com/hyunhwan-jeong/MINA)
MINA is a framework that allows to perform an integrative network analysis for gene-gene interactions associated with clinical outcome across multi-omics profiles.
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Professional Experience
Senior Scientist, Computational Biology & Bioinformatics
Boston, Massachusetts
2021 -
Research Assistant Professor
School of Biomedical Informatics, The University of Texas Health Science Center at Houston
Houston, Texas
2020 - 2021
Postdoctoral Associate
Department of Molecular and Human Genetics, Baylor College of Medicine & Texas Children’s Hospital
Houston, Texas
2015 - 2020
- Mentor: Zhandong Liu and Huda Y. Zoghbi
Education
Selected Peer-Reviewed Publications
Are HHV-6A and HHV-7 Really More Abundant in Alzheimer’s Disease?
Neuron
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2019
Hyun-Hwan Jeong, Zhandong Liu
Beta-binomial modeling of CRISPR pooled screen data identifies target genes with greater sensitivity and fewer false negatives
Genome Research
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2019
Hyun-Hwan Jeong, Seon Young Kim, Maxime W.C. Rousseaux, Huda Y. Zoghbi, Zhandong Liu
Tau Activates Transposable Elements in Alzheimer’s Disease
Cell Reports
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2018
Caiwei Guo, Hyun-Hwan Jeong, Yi-Chen Hsieh, Hans-Ulrich Klein, David A. Bennett, Philip L. De Jager, Zhandong Liu, Joshua M. Shulman
An ultra-fast and scalable quantification pipeline for transposable elements from next generation sequencing data
Biocomputing 2018
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2018
Hyun-Hwan Jeong, Hari Krishna Yalamanchili, Caiwei Guo, Joshua M. Shulman, Zhandong Liu
CRISPRcloud: a secure cloud-based pipeline for CRISPR pooled screen deconvolution
Bioinformatics
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2017
Hyun-Hwan Jeong, Seon Young Kim, Maxime W C Rousseaux, Huda Y Zoghbi, Zhandong Liu
HONORS AND AWARDS
Travel Fellowship
The International Conference on Intelligent Systems for Molecular Biology / the European Conference on Computational Biology
Basel, Switzerland
2019
TMC Biomedical Faculty Award
2019 Korean-American Biomedical Scientists Symposium (KABMS)
Houston, Texas
2019
Travel Fellowship
The Summer School in Systems Medicine
Frauenchiemsee, Germany
2018
First place
Java Algorithm Contest (both years)
SUN Microsystems, Korea
2008 - 2009
Sixth place
The ACM International Collegiate Programming Contest (ACM-ICPC) Asia regional contest
Taipei, Taiwan
2007
Bronze medal
The ACM International Collegiate Programming Contest (ACM-ICPC) Asia regional contest
Seoul, South Korea
2005